Relevant metadata standards
MIBBI (Minimum Information for Biological and Biomedical Investigations)
OME-XML (Open Microscopy Environment XML)
CIF (Crystallographic Information Framework)
QuDEx (Qualitative Data Exchange Format)
SDMX (Statistical Data and Metadata Exchange)
Potentially relevant metadata standards
CF (Climate and Forecast) Metadata Conventions
CIM (Common Information Model)
CSMD (Core Scientific Metadata Model)
DIF (Directory Interchange Format)
CERIF (Common European Research Information Format)
ABCD (Access to Biological Collection Data)
Repositories
European Nucleotide Archive (ENA)
European Variation Archive (EVA)
Database of Genomic Variants Archive (DGVa)
NCBI Sequence Read Archive (SRA)
International Nucleotide Sequence Database Collaboration
Worldwide Protein Data Bank (wwPDB)
Biological Magnetic Resonance Data Bank (BMRB)
Open Energy Data Initiative (OEDI)
HuggingFace ML datasets (see blogpost for more info)
Reporting standards
RNA-seq/qpcr
Microscopy
Tools
Simulation outputs
Open Research
Open Research: Examples of good practice, and resources across disciplines
Other
MRI data
Image Data
XNAT Central (neuroimaging, but also from oncology, orthopaedics and cardiology)
Publications & articles
Battery
[..E]arly independent battery-data activities include those of Battery Archive, BIG-MAP [(BattINFO ontology)], Batteries Europe, and the Faraday Institution. Their diversity of locations and formats underscores the critical need for a singular approach to improve uniformity.38,41 - Ward et al. 2022
BEEP: A Python library for Battery Evaluation and Early Prediction
Galvanalyser is a system for automatically storing data generated by battery cycling machines in a database
MATBOX: Microstructure Analysis Toolbox (Li-ion batteries)
BruggemanEstimator: Open Source Code for Estimating the Tortuosity Estimation of Lithium Ion Battery Porous Electrodes from SEM images
TauFactor is an application for calculating tortuosity factors from tomographic data.
Battery Data Toolkit, converts battery testing data from native formats to a standardized HDF5 file.
Ontologies for battery data (BattINFO & BVCO)
- “There are currently two major ongoing initiatives dedicated to ontologizing the battery domain: The Battery Interface Ontology (BattINFO) and the Battery Value Chain Ontology (BVCO). BattINFO describes batteries on the cell level and below, including not only components, materials, and their interfaces, but also electrochemical processes, models, and characterization data. The objective of BattINFO is to support AI workflows and interoperability of battery data in the research and development community. On the other hand, BVCO describes aspects of the battery value chain with a strong focus on battery manufacturing and recycling. Both BattINFO and BVCO stem from the top-level ontology EMMO and are publicly available under open-source licenses.”
Repositories:
Bio–nano
Minimum information reporting in bio–nano experimental literature (MIRIBEL)